So this is what I ended up doing.
My bag is similar to a sonic case. V2, ODL in one cage. Under that in the second cage SVU and batteries, Under that was a mme running horizontally. I decided to run it vertically. I used my old MBHO cases as a railing on the edge of the cases, to put all cages on top off. This way I have 3 inches in the cage as protection room, and another two inches from the cases. The mme sticks out 6 inches from the top of my bag, but I made a cigar box to protect it. I will have some pics up tonight.