HarpDoc, just to make sure--when you look at the waveforms in your editing software, do you see clipping (overload)? If that's happening, the first order of business is to prevent that in the future.
Please forgive me if that was so obvious that it was an insult to have mentioned it.
Now, going on--if nothing is being overloaded and this is really just a question of setting the EQ--the first thing you might want to check out is that your main problem may be with low-frequency standing waves that are occurring at particular ("spot") frequencies. In other words the overall amount of bass your microphone pick up may well be perfectly OK in general, but due to the room acoustics where you were recording, one or two (or three or ten) particular frequencies have a tendency to "jump out" and if the band is stimulating those particular room resonances, they're dominating the sound of your recording. It would be a shame to kill the overall bass of your recording just because a few spot frequencies have this problem.
If this is what's happening in your recording, the ideal way to find out would be to take a peaking filter (+10 dB maybe, but narrow) and sweep it slowly through the range from maybe 30 to maybe 250 Hz. If you get an alarming increase in output when the filter is centered on a particular frequency, then you might want to try notching that frequency (maybe reducing it by 6 dB as a starting point) to see whether that cleans up your recording without, again, killing the whole bass region. (I mean, I assume that the main reason you use omni mikes is that you like full, deep bass energy.) If you find the two or three or four worst offenders this way, you might be able to get a real improvement in clarity while retaining most of the good stuff.
Otherwise for a general solution I would suggest a shelving reduction of the low frequencies rather than a cutoff filter. The turnover point could be anywhere from 80 to 200 Hz, and the depth (degree of attenuation) could be just 2 or 3 dB or it could be more, depending on the severity of the problem.