Oh, just checked the manual, the BNC connectors on the R88 are for Timecode. To do what you want you would instead use the AES/EBU Digital Out or Digital In XLR connections.
From the manual: "DIGITAL IN jack XLR type (AES/EBU, conforms to IEC 60958-4) * When using Digital Input, IN 1–2 jacks are inactive."
You should be able to use the R88 either as the master clock source (send clock to the other devices via the R88's Digital Out), or use another source as master clock (send clock into the R88 via its Digital In). Thinking of it in R44 terms, the AES/EBU XLRs on the R88 serve essentially the same role as the SPDIF RCA connectors on the R44.
Not sure what converting from XLR to BNC or vice-versa requires, but that's what you should look into.