^ There are a couple common ways to see if two sources are out-of-phase once they are lined up.
First, zoom in as far as possible on a loud peak and see if one source has 'peak' or positive amplitude while the other source has a 'valley' or negative amplitude. If so, they are likely somewhat out of phase and will - at least partially - cancel each other out.
Second, use a real time analyzer to watch the frequency response during playback of the resultant mix of the two sources and look for comb filtering. If there are obvious frequencies where there seems to be a lack of amplitude, especially if you have the same thing happening in harmonics of those frequencies (for example, at 60Hz then 120Hz then 180Hz, and so on), you are probably seeing comb filtering caused by cancellation from the sources being out-of-phase with each other.
You can now try inverting the phase 180 degrees on one of the two sources, and then see if that alleviates the apparent comb filtering. If a phase inversion does not work, or only partially seems to work, you can also try shifting one source a little (fractions of a milisec) along the timeline in an effort to minimize the phase cancellation. Most of the time, with a SBD and an AUD source, it is inevitable that you will have some phase cancellation - an effect of how the room reflections change the waveforms as they are captured by your mics vs. the 'raw' waveforms as they are passing through the SBD console directly to your recorder.