I also use the 1060 with some high density foam, the mics are very snug in this case so it keeps them from moving around. I use the wind screens that came with the mics (havn't upgraded them yet) as a spacer between the mics and the lid.
I also don't like removing the caps, as mentioned before it can be very easy to ruin the threads, when I get some new caps (63's) I'll most likely leave them on unless I feel the 61's would be better.
Here are some photo's, the case is large but I think it's ok, it still fits in my gear bag