That should work fine. You could route either preamp into either input. If one is hotter, it's probably better to put that into the line-input.. then as long as you don't go below a setting of 95 on the line-in to keep the meters from clipping you're good.
Safe line-input gain range which avoids overloading the circuitry as long as the meter reads good is ~95-100.
Safe mic-input gain range which avoids overloading the circuitry as long as the meter reads good is ~63-100.
Settings of 97 and 67 are comfortably in that range and make for approximately equal sensitivity on both inputs, so if you have a way of easily adjusting gain externally, leaving the DR2d on those input gain settings is a good bet.
I dig the DR2d and am more than satisfied with it's sound (or lack of sound- to my thinking it's good because it is essentially transparent). Yeah, you need to push the dual button to switch monitoring [edit] metering back and forth between inputs and must disengage the hold button to do so, but the numeric peak number in dBFS in addition to the bar scale is nice.. and the remote works while the hold is engaged, which I've found is a really great feature for starting and stopping recording with everything safely locked down.