the 744 can output in two different manners, as 1 WAV file with 4 channels, all compressed into the one file
the second, being more common, is to output to 4 mono files and pick and choose as you like to form stereo pairs.
These would be either mono BWF files or poly BWF files.
EDIT: I'm pretty sure you can output BWF files, but it isn't the default/stnd format. so then the question back to the original poster is what format is your device set to record?
I took a quick glance at the 744T manual that was online and they (SD) state that they ARE BWF files. You can name them .wav or .bwf, but the file is identical with the broadcast wav chunck being tacked onto the header of each file. Why Fostex's utility doesn't work with them, I'm not sure, but these are according to Sound Devices broadcast wav files, regardless of what file extension is placed on them.
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EDIT --- Here is the exact verbage from the manual
Audio File Formats
The 744T records audio to the industry-standard Broadcast Wave file format, either monophonic or
polyphonic. Files can be named with either a .WAV or a .BWF extension.
WAV / BWF
The 744T writes AES-31 BWF-formatted fi les. The fi lename extension is user-selectable between
.WAV or .BWF. Users wishing to record “standard” wave fi les should select the .WAV extension.
There is no difference between generated with WAV or BWF extensions except for the extension name.
The audio files created by the 744T place additional information in the file header, called the Broadcast
Audio Extension data chunk. Software that does not recognize this additional broadcast wave
data chunk will simply ignore this added information.
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Wayne