"HOW does one verify FLAC files against the fingerprint file signatures (NOT the internal FLAC file checksums)?"
I guess I'm missing something obvious...arent those(signatures/checksums) the same thing, just under a different name? when you verify the file it compares it to the fingerprint signatures/checksum sent with the files.
to verify that this is the same fileset that the taper/seeder originally seeded you would just compare the same as with shn/md5 files, either visually compare the checksums or run the original md5 against the fileset you have. either way produces the same result