There were problems earlier on, but those issues have been addressed in the software and also the host systems have gotten faster.
However, that said, it's not a turnkey system. You still have to learn a bit about setting the power management settings, formatting the media for optimum performance. Like windows used to be, it helps to reboot from time to time. I reboot whenever I start a recording session with one (usually).
Pocket pc's earlier than Windows Mobile 5 can lose the programs from memory if the battery gets too low. There are fast recovery methods for this if you are prepared.
So, yes. All of these things are problems or annoyances if not addressed. Most people are looking for something a little simpler. People who know the idiosyncrisies of recordiing on the pocket pc can manage and are happy with them.
What the pocket pc can do that adds value is in the programmability. Some users want automated systems for unmanned recording and I have added methods for that. University researchers are still interested in it because of that. And there are some that like the recording with a pocket pc concept.
I should clear up something, that the pdaudio card has nothing to do with analog at all. It's digital only. You have to feed it an SPDIF signal.