A couple thoughts:
1) I'm not familiar with Notmad, but perhaps it is automatically converting to mp3 when it is used to transfer your recordings from your JB3 to your pc.
2) You didn't set the JB3 properly when you made the recordings. Each time you use the JB3 to record, you need to tell it you want to record a .wav file. It does not automatically default to the last setting you used it at (wav, persumably), but instead defaults to converting the incoming digital stream (from the V3 in this case) to mp3 at some particular bitrate, I forget which.
-Todd