I've used Audition for years, but still don't consider myself a power user, so there might be a better answer than this.
I think what I'd do is, in edit view, change your time scale from seconds/milliseconds to number of samples. Then on your first pair of tracks set the cut points at zero and someplace logical prior to the start of the music, noting the exact number of samples you're cutting. On the second pair, do the same thing by setting your cut point at zero, but then on your second cut point, zoom way in so that you get the exact same number of samples highlighted on the second track pair before you hit cut or delete.