From the CDWave page:
Version 1.93.1 released
Version 1.93.1 fixes a bug in 1.93: When saving splits, it would include the header as data, causing an anoying click. Please verify that you have 1.93.1, not 1.93 (without the extra 1)!
So are you guys having this problem with 1.93 or 1.93.1? I'm running 1.93 beta and haven't had a problem with this.
-Kevin