I'm not sure about the sample technique, but how I do it (and this may be a sloppier way I'm sure) is after I align the tracks at the beginning, zoom in as close as I can to two easily pinpointed notes that should be aligned as close to the end as possible and make a note of both. Convert to seconds and divide the larger number by the smaller one and make the answer a % and put that into the change speed.
In other words, once you're aligned at the beginning, go as close to the end as possible to find two points that should be aligned. Just like the beginning cymbal crashes or whatnot are easiest. Zoom in all the way on the two exact points you think should be aligned and write down both times. It should be HH:MM:SS:6 more digits. Convert both times into seconds. So if its over an hour set it would be something like 3700.399213 and 3701.223599. Divide the larger number by the smaller one and turn the answer into a percentage to get how much you should change the longer file by. Just like the sample method the answer should be something just over 1.
Also, either way, remember to highlight just from the point of alignment in the beginning not the whole file.