I wonder if I ran two sources through the internal PLL setting...would I get a steady clock?
First, you have to have equipment that supports external clocking. I didn't realize you were trying to use a JB3. Unless you're feeding it a digital signal, it's using its own clocking. If you're feeding it a digital signal, then the clock from that source is the master.
Is there such a thing as reclocking?
That is in theory what all the pull-up and pull-down thing does. Unfortunately, where this falls down is in how it must be done, D-A-A-D.
I've actually run my setup with two ADs using the same clock - but still seemed to have drift (this has to be repeated because there were errors -clicks- in one of the recordings...)
The clicks are because you really weren't using the same clock. One of the devices was using its own clock and you were feeding it a signal that was driving out a clock, thus you basically had two master clocks. In the digital world this causes the clicks you heard.
Wayne